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HIV Molecular Immunology Database specifications

Information


Unique identifier OMICS_02902
Name HIV Molecular Immunology Database
Restrictions to use None
Maintained Yes

Taxon


  • Viruses
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2

HIV Molecular Immunology Database citations

 (10)
library_books

Analysis of viral diversity for vaccine target discovery

2017
BMC Med Genomics
PMCID: 5763473
PMID: 29322922
DOI: 10.1186/s12920-017-0301-2

[…] mino acids of the predicted epitopes. Epitope databases include general ones, such as the Immune Epitope Database [], SYFPEITHI [], MHCBN [], and specialized ones, such as HCV immunology database [], HIV molecular immunology database [], and influenza database, among others. PubMed or Google search should be carried out to identify specialized databases for the virus species of interest. Though th […]

library_books

Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients

2017
Stand Genomic Sci
PMCID: 5580220
PMID: 28878860
DOI: 10.1186/s40793-017-0263-1

[…] of our representative strain (SC-57) and selected 16S rRNA sequences of the others 10.1601/nm.5230 species []. To building meaningful phylogenetic trees, we choose the FindModel tool available at the HIV Molecular Immunology Database because it allow a correct model nucleotide substitution [] (GTR or GTR plus Gamma was selected based on the Akaike information criterion, initial tree constructed us […]

library_books

An Introduction to B Cell Epitope Mapping and In Silico Epitope Prediction

2016
J Immunol Res
PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] databases can be classified as multifaceted database such as IEDB and AntiJen, B-cell oriented database such as BciPep, Epitome, and SDAP, and single pathogenic organism oriented database such as the HIV Molecular Immunology Database, FLAVIdB, and Influenza Sequence and Epitope Database. It has to be mentioned that most of the available databases include peptide/s recognized by the receptors of th […]

library_books

A HIV Tat/C4 binding protein chimera encoded by a DNA vaccine is highly immunogenic and contains acute EcoHIV infection in mice

2016
Sci Rep
PMCID: 4928126
PMID: 27358023
DOI: 10.1038/srep29131

[…] eptides representing the complete Tat protein, whereas pool 2 lacked the theoretical CD8+ T cell immunodominant epitopes and pool 3 contained only the theoretical CD8+ T cell immunodominant epitopes (HIV molecular immunology database, http://www.hiv.lanl.gov/). The peptide-pulsed dye-labelled cells were pooled and about 40 × 106 cells were adoptively transferred intravenously via the lateral tail […]

library_books

Selection Pressure in CD8+ T cell Epitopes in the pol Gene of HIV 1 Infected Individuals in Colombia. A Bioinformatic Approach

2015
Viruses
PMCID: 4379572
PMID: 25803098
DOI: 10.3390/v7031313

[…] esistance (). All 17 selected substitutions not previously associated to drug resistance were located in CD8+ T-cell epitopes. Of these, 14 have not been previously identified as immune escape in the HIV Molecular Immunology Database of Los Alamos [], opening the possibility of being considered as newly identified escape mutations, and prompting us to consider alternative explanations.One possibil […]

library_books

Design and Evaluation of Optimized Artificial HIV 1 Poly T Cell Epitope Immunogens

2015
PLoS One
PMCID: 4364888
PMID: 25786238
DOI: 10.1371/journal.pone.0116412

[…] e CD8+ T cell epitopes for inducing the CD8+ T cell responses. To construct new HIV polyepitope immunogens known HIV-1 CTL epitopes were taken from the list of best-defined HIV CTL/CD8+ epitopes from HIV molecular immunology database (http://www.hiv.lanl.gov/content/immunology/tables/optimal_ctl_summary.html). Epitopes were selected according to their conservation in HIV-1 isolates of clades A, B, […]

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