HLAforest statistics

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Citations per year

Citations chart
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Popular tool citations

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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases

HLAforest specifications

Information


Unique identifier OMICS_06170
Name HLAforest
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Perl
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for HLAforest

HLAforest in publication

PMCID: 5834780
PMID: 29288513
DOI: 10.1111/cas.13498

[…] tools have been developed to obtain hla allele information from genome‐wide sequencing data (whole‐exome, whole‐genome, and rna sequencing data), including optitype, polysolver, phlat, hlareporter, hlaforest, hlaminer, and seq2hla. we have tested 961 whole‐exome data from the 1000 genomes project to evaluate the accuracy of these programs. among these algorithms, optitype showed the highest […]


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HLAforest institution(s)
Biomolecular Engineering Department, Baskin School of Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA

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