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HLAPred specifications


Unique identifier OMICS_06718
Name HLAPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

HLAPred citations


In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis

PMCID: 5582249
PMID: 28959348
DOI: 10.15171/ijb.1356

[…] d for the prediction of MHC I and MHC II binding peptides with lengths of 8-15 amino acids. T cell epitope prediction web servers were used to predict continuous epitopes. Some of these servers are: HLAPred (www.imtech.res.in/raghava/hlapred/ ), which is a HLA peptide binding predictor. IEDB (Immune-Epitope Database) server (http://tools.immuneepitope.org/-), which provides access to a reliable […]


The evolutionary significance of certain amino acid substitutions and their consequences for HIV 1 immunogenicity toward HLA's A*0201 and B*27

PMCID: 3607191
PMID: 23745018
DOI: 10.6026/97320630009315

[…] ogenic peptides restricted to both MHC Class I and II. MHC Class I and II in silico tools include ProPred, MHC2PRED, RANKPEP, SVMHC, MHCPred, and MHC-BPS, SYFPEITHI, BIMAS, IEDB_ANN, EpiJen, Rankpep, HLApred, NetCTL and Multipred, among others. These algorithms have been shown to be useful in identifying both MHC Class I and/or MHC Class II restricted epitopes [, , , ]. Online in silico tools, tho […]


In Silico identification of M. TB proteins with diagnostic potential

BMC Immunol
PMCID: 3582449
PMID: 23458073
DOI: 10.1186/1471-2172-14-S1-S9

[…] m (Ma) were made with local sequence alignment tools: tfastax from FASTA 36.3.4 [,] and tblastn from BLAST 2.2.25+ [].Subcellular localization was predicted using Tbpred, SignalP and PSort servers [-]HLAPred server was used to carry out the prediction of T cell epitopes corresponding to the selected proteins of MTB H37Rv, and the “Population Coverage Calculation” server [] allowed the estimation o […]


Characterization of Conserved Combined T and B Cell Epitopes in Leptospira interrogans Major Outer Membrane Proteins OmpL1 and LipL41

BMC Microbiol
PMCID: 3038132
PMID: 21269437
DOI: 10.1186/1471-2180-11-21

[…] GENIC program in EMBOSS (http://beta.immuneepitope.org/) was used to predict B cell epitopes and ProPred, a web tool useful in the prediction of HLA-DR binding sites (http://www.imtech.res.in/raghava/hlapred/) [], was used to predict potential T cell epitopes. […]


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