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|Interface||Web user interface|
|Restrictions to use||None|
In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis
[…] d for the prediction of MHC I and MHC II binding peptides with lengths of 8-15 amino acids. T cell epitope prediction web servers were used to predict continuous epitopes. Some of these servers are: HLAPred (www.imtech.res.in/raghava/hlapred/ ), which is a HLA peptide binding predictor. IEDB (Immune-Epitope Database) server (http://tools.immuneepitope.org/-), which provides access to a reliable […]
The evolutionary significance of certain amino acid substitutions and their consequences for HIV 1 immunogenicity toward HLA's A*0201 and B*27
[…] ogenic peptides restricted to both MHC Class I and II. MHC Class I and II in silico tools include ProPred, MHC2PRED, RANKPEP, SVMHC, MHCPred, and MHC-BPS, SYFPEITHI, BIMAS, IEDB_ANN, EpiJen, Rankpep, HLApred, NetCTL and Multipred, among others. These algorithms have been shown to be useful in identifying both MHC Class I and/or MHC Class II restricted epitopes [, , , ]. Online in silico tools, tho […]
In Silico identification of M. TB proteins with diagnostic potential
[…] m (Ma) were made with local sequence alignment tools: tfastax from FASTA 36.3.4 [,] and tblastn from BLAST 2.2.25+ .Subcellular localization was predicted using Tbpred, SignalP and PSort servers [-]HLAPred server was used to carry out the prediction of T cell epitopes corresponding to the selected proteins of MTB H37Rv, and the “Population Coverage Calculation” server  allowed the estimation o […]
Characterization of Conserved Combined T and B Cell Epitopes in Leptospira interrogans Major Outer Membrane Proteins OmpL1 and LipL41
[…] GENIC program in EMBOSS (http://beta.immuneepitope.org/) was used to predict B cell epitopes and ProPred, a web tool useful in the prediction of HLA-DR binding sites (http://www.imtech.res.in/raghava/hlapred/) , was used to predict potential T cell epitopes. […]
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