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HLAPred specifications

Information


Unique identifier OMICS_06718
Name HLAPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

HLAPred citations

 (4)
library_books

In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis

2017
PMCID: 5582249
PMID: 28959348
DOI: 10.15171/ijb.1356

[…] d for the prediction of MHC I and MHC II binding peptides with lengths of 8-15 amino acids. T cell epitope prediction web servers were used to predict continuous epitopes. Some of these servers are: HLAPred (www.imtech.res.in/raghava/hlapred/ ), which is a HLA peptide binding predictor. IEDB (Immune-Epitope Database) server (http://tools.immuneepitope.org/-), which provides access to a reliable […]

library_books

The evolutionary significance of certain amino acid substitutions and their consequences for HIV 1 immunogenicity toward HLA's A*0201 and B*27

2013
Bioinformation
PMCID: 3607191
PMID: 23745018
DOI: 10.6026/97320630009315

[…] ogenic peptides restricted to both MHC Class I and II. MHC Class I and II in silico tools include ProPred, MHC2PRED, RANKPEP, SVMHC, MHCPred, and MHC-BPS, SYFPEITHI, BIMAS, IEDB_ANN, EpiJen, Rankpep, HLApred, NetCTL and Multipred, among others. These algorithms have been shown to be useful in identifying both MHC Class I and/or MHC Class II restricted epitopes [, , , ]. Online in silico tools, tho […]

library_books

In Silico identification of M. TB proteins with diagnostic potential

2013
BMC Immunol
PMCID: 3582449
PMID: 23458073
DOI: 10.1186/1471-2172-14-S1-S9

[…] m (Ma) were made with local sequence alignment tools: tfastax from FASTA 36.3.4 [,] and tblastn from BLAST 2.2.25+ [].Subcellular localization was predicted using Tbpred, SignalP and PSort servers [-]HLAPred server was used to carry out the prediction of T cell epitopes corresponding to the selected proteins of MTB H37Rv, and the “Population Coverage Calculation” server [] allowed the estimation o […]

library_books

Characterization of Conserved Combined T and B Cell Epitopes in Leptospira interrogans Major Outer Membrane Proteins OmpL1 and LipL41

2011
BMC Microbiol
PMCID: 3038132
PMID: 21269437
DOI: 10.1186/1471-2180-11-21

[…] GENIC program in EMBOSS (http://beta.immuneepitope.org/) was used to predict B cell epitopes and ProPred, a web tool useful in the prediction of HLA-DR binding sites (http://www.imtech.res.in/raghava/hlapred/) [], was used to predict potential T cell epitopes. […]

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