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- Homo sapiens
- Mus musculus
- person_outline Hongkai Ji
Publication for hmChIP
Large differences in global transcriptional regulatory programs of normal and tumor colon cells
[…] quence around the transcription start site +/- 1 kb according to hg18 coordinates was obtained with the BSgenome R/Bioconductor package version 1.24.0. The validation analysis was performed using the hmChIP database, which contains ChIP-Seq and ChIP-on-chip data from ENCODE experiments that represent more than 10,000,000 protein-DNA interactions . Only the interactions of TFs with at least more […]
Elucidation of How Cancer Cells Avoid Acidosis through Comparative Transcriptomic Data Analysis
[…] veral TFs and other factors related to transcription regulation for human and mouse . The regulatory relationships were inferred based on ChIP-Seq data collected under 777 different conditions in the hmChip database and transcription factors from the UCSC Genome Browser . […]
Novel semantic similarity measure improves an integrative approach to predicting gene functional associations
[…] DNA or microRNA-mRNA interactions, lag behind PPIs both in coverage and curation, although there have been recent efforts to compile and integrate known interactions into databases and portals (e.g., hmChIP , PSICQUIC , mirDIP , and IPAD ).Improving the coverage and connectivity of the interactome requires new experimental data; however, empirical methods, particularly high-throughput tech […]
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