HMM-Fisher statistics

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HMM-Fisher specifications

Information


Unique identifier OMICS_16321
Name HMM-Fisher
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Shuying Sun <>

Publication for HMM-Fisher

HMM-Fisher in publication

PMCID: 5617875
PMID: 28955039
DOI: 10.1038/s41598-017-12401-8

[…] bisulfite sequencing data. while some tools use simple heuristics to aggregate differentially methylated cpgs into dmrs (e.g. bs-seq, moabs, or methylsig). more recently, hmm based methods such as hmm-fisher have been introduced., another important variation on the theme are reference-based transcriptome assemblers such as cufflinks, truhmm, ora, or transcomb. these tools, however, […]


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HMM-Fisher institution(s)
Department of Biostatistics, Yale University, New Haven, CT, USA; Department of Mathematics, Texas State University, San Marcos, TX, USA
HMM-Fisher funding source(s)
This work was supported by Dr. Shuying Sun’s start-up funds and the Research Enhancement Program provided by Texas State University.

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