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HMMER

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Provides access to the protein homology search algorithms found in the HMMER software suite. Since the first release of the website in 2011, the search repertoire has been expanded to include the iterative search algorithm, jackhmmer. The continued growth of the target sequence databases means that traditional tabular representations of significant sequence hits can be overwhelming to the user. Consequently, additional ways of presenting homology search results have been developed, allowing them to be summarised according to taxonomic distribution or domain architecture. The taxonomy and domain architecture representations can be used in combination to filter the results according to the needs of a user.

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HMMER forum

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HMMER classification

HMMER specifications

Unique identifier:
OMICS_00996
Interface:
Command line interface
Input data:
Protein sequence
Computer skills:
Advanced
Stability:
Stable
Wikipedia:
https://en.wikipedia.org/wiki/HMMER
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Version:
3.1
Maintained:
Yes

HMMER distribution

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HMMER classification

HMMER specifications

Unique identifier:
OMICS_00996
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Input data:
Protein sequence
Version:
3.1
Maintained:
Yes

HMMER support

Maintainer

  • HMMER Team <>
  • HMMER Team <>

Credits

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Publications

Institution(s)

HHMI Janelia Research Campus, Ashburn, VA, USA

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