HMMSplicer pipeline

HMMSplicer specifications


Unique identifier OMICS_01241
Name HMMSplicer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.9.5
Stability Stable
Maintained Yes



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  • person_outline Joseph L. DeRisi <>

Publication for HMMSplicer

HMMSplicer IN pipeline

PMCID: 3990616
PMID: 24743507
DOI: 10.1371/journal.pone.0095057

[…] support estimates. the bayesian majority-rule consensus was then visualized and partially edited using figtree v1.4.0 (rambaut, 2012) and geneious [52]., putative splice sites were identified by hmmsplicer and grouped by output score into 100-point bins. twelve candidates were selected from the highest bin, with scores of 900–1000. pcr primers were designed by primer3 to span the putative […]

HMMSplicer institution(s)
Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA; Biological and Medical Informatics Program, University of California San Francisco, San Francisco, CA, USA; Howard Hughes Medical Institute, Bethesda, MD, USA
HMMSplicer funding source(s)
Supported by the Howard Hughes Medical Institute.

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