HMMTOP pipeline

HMMTOP specifications

Information


Unique identifier OMICS_04185
Name HMMTOP
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Istvan Simon <>

Publication for HMMTOP

HMMTOP citations

 (2)
2018
PMCID: 5787101

[…] cdna of boalmt1 was amplified with sense primer 5′-atggagaaagtgagagagatagtgag-3′ and anti-sense primer 5′-tcaaatctgaagtatacgaacaccc-3′, and then constructed into the pmd18-t vector (takara, japan). hmmtop was used for transmembrane protein prediction analysis. multiple amino acid alignment was conducted by using clustalx and mega4.1 software., boalmt1 expression was evaluated using quantitative […]

2011
PMCID: 3247980

[…] were analyzed with staden package software. multiple global alignments were performed with clustalw 1.81 (23) and plotted with texshade (24). protein transmembrane fragments were predicted with hmmtop 2.0 (25) and plotted with textopo (26)., gene cdnas were synthesized with thermoscript (invitrogen) from total rna of p. falciparum 3d7 and pfx polymerase (invitrogen) following […]

HMMTOP institution(s)
Institute of Enzymology, BRC, Hungarian Academy of Sciences, Budapest, Hungary

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