HMMTOP pipeline

HMMTOP specifications


Unique identifier OMICS_04185
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes


  • person_outline Istvan Simon <>

Publication for HMMTOP

HMMTOP citations

PMCID: 5787101

[…] cdna of boalmt1 was amplified with sense primer 5′-atggagaaagtgagagagatagtgag-3′ and anti-sense primer 5′-tcaaatctgaagtatacgaacaccc-3′, and then constructed into the pmd18-t vector (takara, japan). hmmtop was used for transmembrane protein prediction analysis. multiple amino acid alignment was conducted by using clustalx and mega4.1 software., boalmt1 expression was evaluated using quantitative […]

PMCID: 3247980

[…] were analyzed with staden package software. multiple global alignments were performed with clustalw 1.81 (23) and plotted with texshade (24). protein transmembrane fragments were predicted with hmmtop 2.0 (25) and plotted with textopo (26)., gene cdnas were synthesized with thermoscript (invitrogen) from total rna of p. falciparum 3d7 and pfx polymerase (invitrogen) following […]

HMMTOP institution(s)
Institute of Enzymology, BRC, Hungarian Academy of Sciences, Budapest, Hungary

HMMTOP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review HMMTOP