HMMvar statistics

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Citations per year

Number of citations per year for the bioinformatics software tool HMMvar
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Tool usage distribution map

This map represents all the scientific publications referring to HMMvar per scientific context
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Associated diseases

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Popular tool citations

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HMMvar specifications

Information


Unique identifier OMICS_02181
Name HMMvar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


No version available

Maintainer


  • person_outline Liqing Zhang

Publication for HMMvar

HMMvar citations

 (2)
library_books

The role of small in frame insertions/deletions in inherited eye disorders and how structural modelling can help estimate their pathogenicity

2016
Orphanet J Rare Dis
PMCID: 5024463
PMID: 27628848
DOI: 10.1186/s13023-016-0505-0

[…] quence and affecting gene expression []. A number of computational tools that functionally annotate indels are available including SIFT-indel [], PROVEAN [], DDG-in [], CADD [], PriVar [], PinPor [], HMMvar [], KD4i [], and VEST-indel []. Although some of these tools are reported to achieve relatively high sensitivity and specificity values [], predicting the effect of protein-coding (frameshiftin […]

library_books

Predicting the combined effect of multiple genetic variants

2015
Hum Genomics
PMCID: 4520001
PMID: 26223264
DOI: 10.1186/s40246-015-0040-4

[…] efore, it is important to study the joint effect of multiple variants.This paper focuses on predicting the joint effect of variants from a single gene using a previously proposed hidden Markov model, HMMvar []. As the hidden Markov model is computed from the multiple protein sequence alignment for homologous proteins from different species, it reflects extent of evolutionary conservation naturally […]


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HMMvar institution(s)
Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA

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