HomeoSplitter specifications

Information


Unique identifier OMICS_07406
Name HomeoSplitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.01
Stability Stable
Maintained Yes

Versioning


No version available

Publication for HomeoSplitter

HomeoSplitter citations

 (2)
library_books

Patterns of alternative splicing vary between species during heat stress

2018
PMCID: 5846289
PMID: 29564081
DOI: 10.1093/aobpla/ply013

[…] from independent heat stress and control RNA-seq libraries and assembled using Trinity () and was annotated using annocript (). Since B. depauperata is a polyploid, we disentangled the homologs using homeosplitter (). When we used the B. depauperata transcriptome as reference, ~100185 junctions were identified. Boechera stricta is a close relative of B. depauperata for which a complete genome (JGI […]

library_books

Genotyping by Sequencing Using Specific Allelic Capture to Build a High Density Genetic Map of Durum Wheat

2016
PLoS One
PMCID: 4865223
PMID: 27171472
DOI: 10.1371/journal.pone.0154609

[…] of the transcriptome (DWr) composed of 80,691 contigs was available from a past study [] (). Briefly, RNAs of 172 lines of an Evolutionary Pre-breeding pOpulation (EPO) were sequenced and assembled. Homeosplitter software (http://bioweb.supagro.inra.fr/homeoSplitter) was applied on this de novo assembly to unravel homeologous copies that were initially erroneously merged in a single chimeric cont […]

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