HomeoSplitter specifications


Unique identifier OMICS_07406
Name HomeoSplitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.01
Stability Stable
Maintained Yes


No version available

Publication for HomeoSplitter

HomeoSplitter citations


Patterns of alternative splicing vary between species during heat stress

PMCID: 5846289
PMID: 29564081
DOI: 10.1093/aobpla/ply013

[…] from independent heat stress and control RNA-seq libraries and assembled using Trinity () and was annotated using annocript (). Since B. depauperata is a polyploid, we disentangled the homologs using homeosplitter (). When we used the B. depauperata transcriptome as reference, ~100185 junctions were identified. Boechera stricta is a close relative of B. depauperata for which a complete genome (JGI […]


Genotyping by Sequencing Using Specific Allelic Capture to Build a High Density Genetic Map of Durum Wheat

PLoS One
PMCID: 4865223
PMID: 27171472
DOI: 10.1371/journal.pone.0154609

[…] of the transcriptome (DWr) composed of 80,691 contigs was available from a past study [] (). Briefly, RNAs of 172 lines of an Evolutionary Pre-breeding pOpulation (EPO) were sequenced and assembled. Homeosplitter software (http://bioweb.supagro.inra.fr/homeoSplitter) was applied on this de novo assembly to unravel homeologous copies that were initially erroneously merged in a single chimeric cont […]

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