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HomeoSplitter specifications

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Unique identifier OMICS_07406
Name HomeoSplitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.01
Stability Stable
Maintained Yes

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Publication for HomeoSplitter

HomeoSplitter in publications

 (2)
PMCID: 5846289
PMID: 29564081
DOI: 10.1093/aobpla/ply013

[…] independent heat stress and control rna-seq libraries and assembled using trinity () and was annotated using annocript (). since b. depauperata is a polyploid, we disentangled the homologs using homeosplitter (). when we used the b. depauperata transcriptome as reference, ~100185 junctions were identified. boechera stricta is a close relative of b. depauperata for which a complete genome […]

PMCID: 4865223
PMID: 27171472
DOI: 10.1371/journal.pone.0154609

[…] of the transcriptome (dwr) composed of 80,691 contigs was available from a past study [] (). briefly, rnas of 172 lines of an evolutionary pre-breeding population (epo) were sequenced and assembled. homeosplitter software (http://bioweb.supagro.inra.fr/homeosplitter) was applied on this de novo assembly to unravel homeologous copies that were initially erroneously merged in a single chimeric […]

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