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HOmologous Processed PseudoGENes HOPPSIGEN

Obsolete

Provides information about processed pseudogenes location, potential function, base composition and gene structure in human and mouse. HOPPSIGEN is a nucleic acid database that can be useful in comparative and functional genomics. The database allows users to extract complete retroelement sequences or only part of them (5’-FL, CDE, 3’-FL, direct repeats, polyadenylation tracks) as well as processed pseudogenes of different GC-content or similarity percent. HOPPSIGEN also provides alignments and phylogenetic trees.

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HOPPSIGEN classification

  • Animals
    • Homo sapiens
    • Mus musculus

HOPPSIGEN specifications

Restrictions to use:
None
Data access:
Browse
Maintained:
No
Community driven:
No
User data submission:
Not allowed

HOPPSIGEN support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université Claude Bernard–Lyon Villeurbanne, France

Funding source(s)

Supported by the Centre National de la Recherche Scientifique and the Claude Bernard University (Lyon, France).

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