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HORDE specifications

Information


Unique identifier OMICS_07189
Name HORDE
Alternative name Human Olfactory Data Explorer
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Human_Olfactory_Data_Explorer

Taxon


  • Primates
    • Homo sapiens

Publications for Human Olfactory Data Explorer

HORDE citations

 (3)
library_books

Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five pacer viper

2016
Nat Commun
PMCID: 5059746
PMID: 27708285
DOI: 10.1038/ncomms13107

[…] ning more at least 6 transmembrane (TM) structures were considered as intact candidates and the rest were also considered as pseudogenes. Finally, each OR sequence identified was searched against the Human Olfactory Data Explorer (the HORDE) database ( http://genome.weizmann.ac.il/horde/) using the FASTA ( ftp://ftp.virginia.edu/pub/fasta), and classified into the different families according to t […]

library_books

Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset

2014
Front Psychol
PMCID: 3970011
PMID: 24715883
DOI: 10.3389/fpsyg.2014.00247

[…] —hsa04612) were considered. In addition, the group of genes encoding ORs was considered. To estimate the promoter variability for genes encoding ORs, genes encoding ORs were extracted from HORDE (The Human Olfactory Data Explorer, http://genome.weizmann.ac.il/horde/) (Olender et al., ).Final lists of transcripts for three groups were compiled according to criteria a, b, c, described above in this […]

library_books

Characterization of Squamate Olfactory Receptor Genes and Their Transcripts by the High Throughput Sequencing Approach

2012
Genome Biol Evol
PMCID: 3342882
PMID: 22511035
DOI: 10.1093/gbe/evs041

[…] y short (∼2 kb) contigs. In the python, all nondisrupted OR sequences of less than 800 bp in length were classified as truncated genes. Each OR sequence identified was searched against the HORDE (the Human Olfactory Data Explorer) #42 database (, http://genome.weizmann.ac.il/horde/) using the FASTA search and classified into the same family as the best-hit human OR sequence. Our family classificat […]

Citations

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HORDE institution(s)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel

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