Allows easy access to all known cases of horizontal transfer of transposable elements (HTT) reported along with rich information about each case. Moreover, it allows the user to generate tables and graphs based on searches using TEs and/or host species classification and export them in several formats.
- Restrictions to use:
- None
- Programming languages:
- Java
- Database support:
- Yes
- Database management system:
- MySQL
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Here is an alternative path to HTT-DB "http://www.pluriserver.com.br/httdatabase" while we are…
Here is an alternative path to HTT-DB "http://www.pluriserver.com.br/httdatabase" while we are trying to solve some connection issues.
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Maintainer
- Gabriel Luz Wallau <gabriel.wallau at gmail.com>
Institution(s)
Universidade Federal do Pampa, São Gabriel, Brasil
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(Dotto et al., 2015) HTT-DB – Horizontally transferred transposable elements database. Bioinformatics.
PMID: 25940562
- Animals
- Fungi
- Plants
- Protists
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(Bergman and Quesneville, 2007) Discovering and detecting transposable elements in genome sequences. Briefings in bioinformatics.
PMID: 17932080 -
(Anisimova et al., 2015) Statistical approaches to detecting and analyzing tandem repeats in genomic sequences. Frontiers in bioengineering and biotechnology.
PMID: 25853125 -
(Saha et al., 2008) Empirical comparison of ab initio repeat finding programs. Nucleic acids research.
PMID: 18287116 -
(Lerat, 2010) Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity.
PMID: 19935826 -
(Janicki et al., 2011) Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome research.
PMID: 21850457