1. Directory
  2. Genomics
  3. Genome annotation
  4. Repetitive DNA
Join community Sign in
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

Allows easy access to all known cases of horizontal transfer of transposable elements (HTT) reported along with rich information about each case. Moreover, it allows the user to generate tables and graphs based on searches using TEs and/or host species classification and export them in several formats.

Restrictions to use:
None
Programming languages:
Java
Database support:
Yes
Database management system:
MySQL
View all reviews

1 user reviews

Gabriel Wallau's avatar image

Gabriel Wallau

Here is an alternative path to HTT-DB "http://www.pluriserver.com.br/httdatabase" while we are…

View all issues

0 issue

No open issue.

Maintainer

  • Gabriel Luz Wallau <gabriel.wallau at gmail.com>

Institution(s)

Universidade Federal do Pampa, São Gabriel, Brasil

  • (Dotto et al., 2015) HTT-DB – Horizontally transferred transposable elements database. Bioinformatics.
    PMID: 25940562
  • Animals
  • Fungi
  • Plants
  • Protists
  • (Bergman and Quesneville, 2007) Discovering and detecting transposable elements in genome sequences. Briefings in bioinformatics.
    PMID: 17932080
  • (Anisimova et al., 2015) Statistical approaches to detecting and analyzing tandem repeats in genomic sequences. Frontiers in bioengineering and biotechnology.
    PMID: 25853125
  • (Saha et al., 2008) Empirical comparison of ab initio repeat finding programs. Nucleic acids research.
    PMID: 18287116
  • (Lerat, 2010) Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity.
    PMID: 19935826
  • (Janicki et al., 2011) Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome research.
    PMID: 21850457

77 related tools