hot_scan statistics

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hot_scan specifications

Information


Unique identifier OMICS_05200
Name hot_scan
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
Math::GSL::SF; AnyEvent::ForkManager; File::Path
Maintained Yes

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Documentation


Maintainers


  • person_outline Israel T. Silva <>
  • person_outline Rafael Rosales <>

Publication for hot_scan

hot_scan in publication

PMCID: 5741661
PMID: 29273740
DOI: 10.1038/s41467-017-02445-9

[…] ndicating that the local eqtls tended to have larger effects on gene expression than distant eqtls (fig. ).fig. 4 , distant eqtl hotspots are regions that regulate the expression of many genes. using hot_scan, 49 distant eqtl hotspots were identified (supplementary data ). two regions, one on lg3 (lg3: 129896517–129898847, p adjust = 2.01 × 10–230) and one on lg5 (lg5: 85992389–86123627, p adjust  […]


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hot_scan institution(s)
Laboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA; Departamento de Computacao e Matematica, Ribeirao Preto, Brazil; National Institute of Science and Technology in Stem Cell and Cell Therapy and Center for Cell Based Therapy, Ribeirao Preto, Brazil
hot_scan funding source(s)
Supported by a NIH grant number AI037526.

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