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HPC-CLUST | Distributed hierarchical clustering for large sets of nucleotide sequences

A highly optimized software pipeline that can cluster large numbers of pre-aligned DNA sequences by running on distributed computing hardware. HPC-CLUST allocates both memory and computing resources efficiently, and can process more than a million sequences in a few hours on a small cluster.

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HPC-CLUST classification

HPC-CLUST specifications

Unique identifier:
OMICS_01446
Interface:
Command line interface
Input data:
A set of pre-aligned sequences
Programming languages:
C++
License:
GNU General Public License version 2.0
Version:
1.2.1
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Operating system:
Unix/Linux
Parallelization:
MPI
Computer skills:
Advanced
Stability:
Stable

HPC-CLUST distribution

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HPC-CLUST support

Documentation

Maintainer

  • C. von Mering <>

Credits

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Publications

Institution(s)

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland

Funding source(s)

ERC grant (Starting Grant ‘UMICIS/242870’)

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