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HPeak specifications

Information


Unique identifier OMICS_00444
Name HPeak
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BED,ELAND
Operating system Unix/Linux
Programming languages C++, Perl, Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Zhaohui Qin <>

Publication for HPeak

HPeak in pipeline

2015
PMCID: 4618451
PMID: 26278042
DOI: 10.1016/j.stemcr.2015.07.005

[…] between any of the adjacent cell-cycle time points and included these in heatmap analysis. for chip-seq with immunoprecipitations against h3k27ac and h3k4me1, reads were mapped using bowtie (). hpeak () was used to call peaks from mapped reads. gene ontology (go) analysis was conducted using r (http://www.r-project.org/). differential binding sites were identified using a conditional […]


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HPeak in publications

 (21)
PMCID: 5807855
PMID: 29449937
DOI: 10.1186/s13628-018-0042-4

[…] \mathbf{(241.8)}~\boldsymbol{kj/mol} \end{array} $$ \end{document}2(h2)+o2→2(h2o)(g)002(−241.8)+2(241.8)kj/mol , glycine, gly, g, c2h5no2, 75 da, hf =−528 kj/mol., simple endothermic peak at 250 °c, hpeak =−72.1 kj/mol., the qms signal of \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} […]

PMCID: 5789853
PMID: 29382852
DOI: 10.1038/s41467-018-02899-5

[…] fig. ). analysis of the flux-pinning force, fp = ic × μ0h, shows that the normalized flux-pinning force follows a power-law dependence on magnetic field, fp(h) ∝ hp(1−h)q, and is peaked around hpeak ≈ 0.6, which is characteristic of type-ii superconductors with weak pinning (see supplementary fig. ). here, the normalized pinning force is fp = fp/fp,max and the reduced field is h = h/hirr, […]

PMCID: 5775345
PMID: 29352144
DOI: 10.1038/s41598-018-19636-z

[…] in the fig. . from the magnetization curves have been taken at various t, we determined the temperature dependence of the magnetic field value corresponding to the second peak in magnetization, hpeak. it follows that for the fexnbse2 superconductor the position of the second-peak shifts toward lower fields monotonically on increasing the temperature, in analogy to what was observed […]

PMCID: 5768741
PMID: 29335558
DOI: 10.1038/s41467-017-02743-2

[…] merged at 25 k and then separated again when t was further decreased. figure  shows the microwave absorption intensity i spectra with positive field sweeps. we traced the peak position of i spectrum hpeak using the red dashed line, and found it coincided with zero hext at the zero-field fmr temperature t0 ~25 k. below 25 k, hpeak moved across the origin and one needed to reverse hext to counter […]

PMCID: 5676657
PMID: 28961163
DOI: 10.3390/s17102235

[…] bin identifiers; b is a beam identifier; and i(i,b) is the intensity of ith-bin of bth-beam. the intensity ipeak(b,b) is an offset of imean(b,b), as shown in equation (). (2)ipeak(b,b)=imean(b,b)+hpeak, where hpeak is a constant that determines the minimum height of a peak of intensity. a sequence of bins with an intensity i(b,b) greater than ipeak(b,b) is considered part of a peak […]


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HPeak institution(s)
Center for Statistical Genetics, Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI, USA; Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA; Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA; Division of Hematology/Oncology, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA; Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Urology, University of Michigan Medical School, Ann Arbor, MI, USA; Howard Hughes Medical Institute, Chevy Chase, MD, USA
HPeak funding source(s)
Supported by an NIH Ruth L. Kirschstein post-doctoral training grant , in part by Department of Defense New Investigator Award PC080665 and National Institutes of Health K99/R00 grant K99CA129565, the Department of Defense Era of Hope grant BC075023 and the National Functional Genomics Center W81XWH-09-2-0014; National Cancer Institute SPORE in Prostate Cancer P50 CA69568, the Burroughs Wellcome Fund, and the Prostate Cancer Foundation, in part by NIH grant R01HG005119, and in part by NIH Comprehensive Cancer Center grant CA 46592 and Prostate SPORE grant CA69568.

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