HPG Aligner specifications

Unique identifier:
OMICS_05479
Interface:
Command line interface
Input data:
DNA sequences, RNA sequences
Output data:
Mapped sequences
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Version:
2.0.1
Requirements:
git, gcc, scons, zlib, curl, xml, curses, gsl, check
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ
Output format:
SAM, BAM
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

HPG Aligner distribution

download

HPG Aligner support

Documentation

Maintainer

  • Joaquin Tarraga <>

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Credits

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Publications

Institution(s)

Department of Computational Genomics, Centro de Investigación Príncipe Felipe, Valencia, Spain; Functional Genomics Node, Instituto Nacional de Bioinformática, Valencia, Spain; Departamento de Informática, Universidad de Valencia, Valencia, Spain; Departamento de Ingeniería y Ciencia de Computadores, Universitat Jaume, Castellón de la Plana, Spain; Instituto de Investigación en Informática de Albacete, Universidad de Castilla-La Mancha, Albacete, Spain; Universitat Politècnica de València, Instituto de Instrumentación para Imagen Molecular, Valencia, Spain; Grupo de Investigación Biomédica de Imagen, La Fe Polytechnic University Hospital, Valencia, Spain; Bioinformatics of Rare Diseases, CIBER de Enfermedades Raras, Valencia, Spain

Funding source(s)

Funded by Spanish Ministry of Economy and Competitiveness), the HPC4G initiative and the Bull-CIPF Chair for Computational Genomics.

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