HPG pore specifications

Unique identifier:
OMICS_11235
Interface:
Command line interface
Input format:
FAST5
Biological technology:
Oxford Nanopore
Programming languages:
Java
Computer skills:
Advanced
Requirements:
Maven, gcc, zlib, Hadoop
Maintained:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
None
Output format:
FASTQ/FASTA
Operating system:
Unix/Linux
License:
Apache License version 2.0
Stability:
Stable
High performance computing:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

HPG pore support

Documentation

Maintainer

  • Joaquin Tarraga <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain; Departamento de Informática, ETSE, Universidad de Valencia, Valencia, Spain; HPC Service, University Information Services, University of Cambridge, Cambridge, UK; Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, Spain; Functional Genomics Node, (INB) at CIPF, Valencia, Spain

Funding source(s)

This work was supported by grants BIO2014-57291-R from the Spanish Ministry of Economy and Competitiveness (MINECO) and Plataforma de Recursos Biomoleculares y Bioinformáticos PT 13/0001/0030 from the ISCIII, both co-funded with European Regional Development Funds (ERDF), and PROMETEOII/2014/025 from the Conselleria de Educacio of the Valencian Community, FP7-PEOPLE-2012-ITN MLPM2012 318861 from the EU FP7.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools