HPG pore specifications


Unique identifier OMICS_11235
Name HPG pore
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format FAST5
Output format FASTQ/FASTA
Biological technology Oxford Nanopore
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maven, gcc, zlib, Hadoop
High performance computing Yes
Maintained Yes


No version available



  • person_outline Joaquin Tarraga

Publication for HPG pore

HPG pore institution(s)
Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain; Departamento de Informática, ETSE, Universidad de Valencia, Valencia, Spain; HPC Service, University Information Services, University of Cambridge, Cambridge, UK; Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, Spain; Functional Genomics Node, (INB) at CIPF, Valencia, Spain
HPG pore funding source(s)
This work was supported by grants BIO2014-57291-R from the Spanish Ministry of Economy and Competitiveness (MINECO) and Plataforma de Recursos Biomoleculares y Bioinformáticos PT 13/0001/0030 from the ISCIII, both co-funded with European Regional Development Funds (ERDF), and PROMETEOII/2014/025 from the Conselleria de Educacio of the Valencian Community, FP7-PEOPLE-2012-ITN MLPM2012 318861 from the EU FP7.

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