hppRNA statistics

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Citations per year

Citations chart
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Popular tool citations

chevron_left Known transcript quantification SNP detection Circular RNA detection Differential expression Spliced read alignment Gene fusion detection Variant detection Normalization Bioinformatics workflows chevron_right
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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases

hppRNA specifications

Information


Unique identifier OMICS_15003
Name hppRNA
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Raw files.
Input format FASTQ
Output data Gene/isoform expression matrix and differentially expressed genes or isoforms.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, R
Computer skills Advanced
Version 1.3.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Dapeng Wang <>

Publication for hppRNA

hppRNA institution(s)
Department of Plant Sciences, University of Oxford, Oxford, UK

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