HPRS pipeline statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Regulatory variant prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

HPRS pipeline specifications

Information


Unique identifier OMICS_19093
Name HPRS pipeline
Alternative name Human Projection of Regulatory Sequences pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Maintained No

Versioning


Add your version

Maintainer


This tool is not available anymore.

Publication for Human Projection of Regulatory Sequences pipeline

HPRS pipeline in publication

PMCID: 5838836
PMID: 29618048
DOI: 10.1093/gigascience/gix136

[…] to filter these mapped sequences, which are enriched for regulatory sequence features, to predict a set of high-confidence regulatory regions. we selected cattle as the target species to build the hprs pipeline and then used the pig as a test species to validate the pipeline. the 2 species are important agricultural ruminant and nonruminant species, respectively, with genomes sequenced […]


To access a full list of publications, you will need to upgrade to our premium service.

HPRS pipeline institution(s)
CSIRO Agriculture, St. Lucia, QLD, Australia; Divisions of Genomics of Development and Disease, Institute for Molecular Bioscience, University of Queensland, St. Lucia, QLD, Australia; School of Veterinary Science, University of Queensland, Gatton, QLD, Australia; The Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, QLD, Australia; Institute of Agriculture, The University of Western Australia, Perth, Western Australia, Australia
HPRS pipeline funding source(s)
Supported by a CSIRO OCE Postdoctoral Fellowship.

HPRS pipeline reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review HPRS pipeline