HPRS pipeline statistics

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Associated diseases

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HPRS pipeline specifications


Unique identifier OMICS_19093
Name HPRS pipeline
Alternative name Human Projection of Regulatory Sequences pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Maintained No


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Publication for Human Projection of Regulatory Sequences pipeline

HPRS pipeline in publication

PMCID: 5838836
PMID: 29618048
DOI: 10.1093/gigascience/gix136

[…] to filter these mapped sequences, which are enriched for regulatory sequence features, to predict a set of high-confidence regulatory regions. we selected cattle as the target species to build the hprs pipeline and then used the pig as a test species to validate the pipeline. the 2 species are important agricultural ruminant and nonruminant species, respectively, with genomes sequenced […]

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HPRS pipeline institution(s)
CSIRO Agriculture, St. Lucia, QLD, Australia; Divisions of Genomics of Development and Disease, Institute for Molecular Bioscience, University of Queensland, St. Lucia, QLD, Australia; School of Veterinary Science, University of Queensland, Gatton, QLD, Australia; The Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, QLD, Australia; Institute of Agriculture, The University of Western Australia, Perth, Western Australia, Australia
HPRS pipeline funding source(s)
Supported by a CSIRO OCE Postdoctoral Fellowship.

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