HPV Sequence Database statistics

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HPV Sequence Database specifications


Unique identifier OMICS_22296
Name HPV Sequence Database
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes


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HPV Sequence Database citations


HPV Population Profiling in Healthy Men by Next Generation Deep Sequencing Coupled with HPV QUEST

PMCID: 4776183
PMID: 26821041
DOI: 10.3390/v8020028
call_split See protocol

[…] genotyping server which collected 150 cutaneous and mucosal HPV reference sequences containing the L1 region obtained from National Center for Biotechnology Information (NCBI) Genebank [], Los Alamos HPV Sequence Database [] and Virus Sequence Database [] with nomenclatures updated, and accommodates large sequence data sets for automated and expedited HPV genotyping and classification of HPV genus […]


In North America, Some Ovarian Cancers Express the Oncogenes of Preventable Human Papillomavirus HPV 18

Sci Rep
PMCID: 4342572
PMID: 25721614
DOI: 10.1038/srep08645

[…] otocol. We then used Bowtie 2 software to determine whether the remaining non-human reads would align to HPV oncogene reference sequences. All of the reference sequences we used are documented at the HPV sequence database PaVE (http://pave.niaid.nih.gov), maintained by the National Institute of Allergy and Infectious Diseases. Each reference sequence is available from the National Center for Biote […]


Genetic Variability and Phylogeny of High Risk HPV Type 16, 18, 31, 33 and 45 L1 Gene in Greek Women

Int J Mol Sci
PMCID: 3269669
PMID: 22312235
DOI: 10.3390/ijms13010001
call_split See protocol

[…] least one unique nucleotide sequence variation in comparison to other isolates of the same type. Trees were visualized using TreeView []. All reference sequences were taken from the Los Alamos-based HPV sequence database []. In the tree of HPV 16 () apart from the variants found in this study we have used variants of HPV 16 retrieved from GenBank: HPV 16 EG (European German, AF536179), HPV 16 AA […]


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