HPVDetector specifications

Information


Unique identifier OMICS_21870
Name HPVDetector
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A paired-end whole-exome, whole-genome or whole-transcriptome data set.
Output data A result file which enlists one or more HPV type(s) and number of HPV reads or a result file containing HPV integration loci on the human genome, annotation of HPV genes, human genes and human genome cytobands.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Amit Dutt <>

Publication for HPVDetector

HPVDetector institution(s)
Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, India
HPVDetector funding source(s)
Supported by an Intermediate Fellowship from the Wellcome Trust/DBT India Alliance (IA/I/11/2500278); by a grant from DBT (BT/PR2372/ AGR/36/696/2011); intramural grants (IRB project 92 and 55); a senior research fellowship from ACTREC and a senior research fellowship from CSIR.

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