HSF protocols

HSF specifications


Unique identifier OMICS_00176
Name HSF
Alternative name Human Splicing Finder
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A single sequence
Computer skills Basic
Version 3.1
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens


Publication for Human Splicing Finder

HSF IN pipelines

PMCID: 5525221
PMID: 28738860
DOI: 10.1186/s12885-017-3488-x

[…] block structure and the association of haplotypes with breast/ovarian cancer were analysed using haploview. the functionality of the identified variants was predicted using haploreg, regulomedb, human splicing finder, and pathogenic-or-not-pipeline 2., altogether, 12 germline emsy variants were observed. two alterations were located in the coding region, five alterations were intronic, […]

PMCID: 4450850
PMID: 26031516
DOI: 10.1186/s12967-015-0525-x

[…] lt;10 bp from) a sequence region containing 2 hexamer non-coding elements (also named as intron identity elements or iie), which may act as splicing motifs, according to the algorithms implemented in human splicing finder [12]. these motifs contain the following sequences: atggtg and tggtgg [12, 13].table 3genevariantindividual id and phenotypegenotype macf1 1:39,854,1319 (ss)(ac) macf1/kiaa0754 1 […]

PMCID: 4120243
PMID: 24997988
DOI: 10.1038/ng.3031

[…] except for the insertion of a block trimming step as described in 33. serial sections were aligned using the trakem2 plugin 43 from fiji 44., homozygositymapper, http://www.homozygositymapper.org/, human splicing finder, http://www.umd.be/hsf/, polyphen-2, http://genetics.bwh.harvard.edu/pph2/, nhlbi exome sequencing project (esp) exome variant server, http://evs.gs.washington.edu/evs/, […]

PMCID: 3751836
PMID: 24009725
DOI: 10.1371/journal.pone.0073020

[…] aat cdna was determined by orf finder at ncbi (www.ncbi.nlm.nih.gov/gorf/)., to identify snps with potential impact on splicing of serpina1 gene, mutant and wild sequences were analyzed with the human splicing finder software (, which includes several matrices to analyze splice sites and splicing silencers and enhancers., to determine the potential deleterious […]

HSF institution(s)
INSERM, U827, Montpellier, France; CHU Montpellier, Hopital Arnaud de Villeneuve, Laboratoire de Genetique Moleculaire, Montpellier, France; Universite Montpellier 1, UFR Medecine, Montpellier, France
HSF funding source(s)
Supported by European Community Seventh Framework Program (FP7/2007-2013) under grant agreement number 200754—the GEN2PHEN project, the European Community Sixth Framework Program (FP6) under grant agreement number 036825 and TREAT-NMD Network of Excellence.

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