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Protocols

HSLPred specifications

Information


Unique identifier OMICS_01622
Name HSLPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


Publication for HSLPred

HSLPred citations

 (4)
library_books

In Silico Structural and Functional Characterization of a V. cholerae O395 Hypothetical Protein Containing a PDZ1 and an Uncommon Protease Domain

2013
PLoS One
PMCID: 3575494
PMID: 23441214
DOI: 10.1371/journal.pone.0056725

[…] The CELLO output gave significant reliability for outer membrane (1.493), periplasmic (1.477) and extracellular (1.426). SignalP predicted it as a non-secretory protein. Localization study using the HSLpred and the SubLoc v1.0 servers , both predicted it to be a periplasmic protein. This may be because of the fact that the PDZ domains of DegP proteins have been observed to be crucial for membran […]

library_books

A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk mPLoc 2.0

2010
PLoS One
PMCID: 2848569
PMID: 20368981
DOI: 10.1371/journal.pone.0009931

[…] benchmark dataset in excluding homologous sequences, or the more subcellular locations it covers, the more difficult for a predictor to yield a high overall success rate. For instance, ProtLock and HSLPred are two predictors developed for identifying protein subcellular localization. Both were reported with the success rates over 70–80% , when tested by the benchmark datasets that allow inclus […]

library_books

Semi supervised protein subcellular localization

2009
BMC Bioinformatics
PMCID: 2648770
PMID: 19208149
DOI: 10.1186/1471-2105-10-S1-S47

[…] arly adopted in bioinformatics and is shown to perform relatively better compared to many others. There are also a large number of specialized databases are exploited such as DBSubLoc [], ESLPred [], HSLpred [], LOCSVMPSI [], LOC3d [], PSORTb [], PSORT [], LOCtree [], BaCelLo [], TargetP [], SecretomeP [], PredictNLS [], WoLF PSORT [], Proteome Analyst [], and CELLO [].In this paper, we present a […]

call_split

Identification of a subunit of NADH dehydrogenase as a p49/STRAP binding protein

2008
BMC Cell Biol
PMCID: 2268686
PMID: 18230186
DOI: 10.1186/1471-2121-9-8
call_split See protocol

[…] using web-based and/or freely-downloaded bioinformatic tools, including "PSORT II" [], "iPSORT" [], "WoLF PSORT", "BaCelLo" [], "pTARGET" [], "CELLO version 2" [], "Golgi Localization Predictor" [], "HSLPred" [], "GoCore" and "SignalP" []. […]

Citations

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HSLPred institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India

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