hsphase specifications

Unique identifier:
OMICS_13145
Interface:
Command line interface
Input data:
Hsphase requires a map file (name, chromosome and map positions), a genotype data file (numerically coded as 0, 1, 2 for the three genotypes and 9 for missing data) and a pedigree file (individuals and paternal ancestor).
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
2.0.1
Requirements:
Snowfall, RcppArmadillo
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
SNP
Programming languages:
C++, R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://cran.r-project.org/src/contrib/hsphase_2.0.1.tar.gz

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hsphase distribution

download

hsphase support

Documentation

Maintainer

  • Mohammad Ferdosi <>

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Publications

Institution(s)

The Centre for Genetic Analysis and Applications, School of Environmental and Rural Science, University of New England, Armidale, Australia; Hanwoo Experiment Station, National Institute of Animal Science, RDA, Pyeongchang, Korea

Funding source(s)

This work was supported by a grant from the Next-Generation BioGreen 21 Program (No. PJ008196), Rural Development Administration, Republic of Korea and by an Australian Research Council Discovery Project DP130100542.

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