HSPVdb specifications


Unique identifier OMICS_26892
Name HSPVdb
Alternative name Human Short Peptide Variation Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Peter van Veelen

Additional information

A flat file with the content of the HSPV database can be requested by sending an email to [email protected]

Publication for Human Short Peptide Variation Database

HSPVdb citation


Integrating Genomic, Transcriptomic, and Interactome Data to Improve Peptide and Protein Identification in Shotgun Proteomics

J Proteome Res
PMCID: 4059263
PMID: 24792918
DOI: 10.1021/pr500194t

[…] mpirically identified to balance false-positives and false-negatives. Their study identified 36 alternative SNP alleles which were not included in the reference IPI database.Nijveen et al. designed a Human Short Peptide Variation Database (HSPVdb) dedicated to minor histocompatibility antigens (MiHAs) and demonstrated the value of the database by identifying the majority of published polymorphic S […]

HSPVdb institution(s)
Laboratory of Bioinformatics, Wageningen University, Wageningen, The Netherlands; The Netherlands Bioinformatics Centre, Nijmegen, The Netherlands; Department of Hematology, Leiden University Medical Center, Leiden, The Netherlands; Department of Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, The Netherlands; Université d’Auvergne, Clermont-Ferrand, France; Hanzehogeschool Groningen, Groningen, The Netherlands

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