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HTJoinSolver

Alternative name: JOINSOLVER

Handles alignments with insertions/deletions (indels), while maintaining or improving the speed. HTJOINSOLVER is a desktop application, provided as an implementation of the partitioning method. Similar to the original JOINSOLVER algorithm, it conserves motifs to initiate the alignment process. The original algorithm was developed as a fast and accurate method, but was not designed to handle indels.

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HTJoinSolver classification

  • Animals
  • Fungi
  • Plants
  • Protists

HTJoinSolver specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
V-D-J segment partitioning
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Version:
1.0
Maintained:
Yes
Interface:
Graphical user interface
Input format:
FASTA
Biological technology:
Illumina, Roche
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable

HTJoinSolver distribution

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HTJoinSolver classification

  • Animals
  • Fungi
  • Plants
  • Protists

HTJoinSolver specifications

Software type:
Application/Script
Restrictions to use:
None
Input format:
KABAT, IMGT
Stability:
Stable
Interface:
Web user interface
Input data:
A sequence.
Computer skills:
Basic
Maintained:
Yes

HTJoinSolver support

Documentation

Maintainer

  • Daniel E. Russ <>
  • Daniel E. Russ <>

Credits

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Publications

Institution(s)

Division of Computational Bioscience, Center for Information Technology, NIH, Bethesda, MD, USA; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD, USA

Funding source(s)

This work was supported by the Intramural Research Programs of the Center for Information Technology, National Institutes of Health and the Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health.

Link to literature

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