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HTPheno specifications


Unique identifier OMICS_26063
Name HTPheno
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1
Stability Stable
Source code URL
Maintained Yes




No version available



  • person_outline Falk Schreiber
  • person_outline Anja Hartmann

Additional information

Publication for HTPheno

HTPheno citations


Genome assisted Breeding For Drought Resistance

Curr Genomics
PMCID: 4955035
PMID: 27499682
DOI: 10.2174/1389202917999160211101417

[…] nge. In recent years, several plant image analysis databases have been established, although they remain few compared with DNA sequence databases, reviewed by Fahlgren and colleagues [], for example, HTPheno [], Plant Image Analysis database [] and Integrated Analysis Platform []. Three-dimensional reconstructions of the plant canopy with multispectral images can resolve phenotypic differences at […]


Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems

Front Plant Sci
PMCID: 4299434
PMID: 25653655
DOI: 10.3389/fpls.2014.00770

[…] d from a single image. A range of software applications have been developed for whole plant analysis, such as IAP (Klukas et al., ), PhenoPhyte (Green et al., ), Rosette Tracker (De Vylder et al., ), HTPheno (Hartmann et al., ), HYPOTrace (Wang et al., ), LAMINA (Bylesjo et al., ), or dedicated to plant organs such as roots RootNav (Pound et al., ) or leaves LeafAnalyser (Weight et al., ) and seed […]


P TRAP: a Panicle Trait Phenotyping tool

BMC Plant Biol
PMCID: 3848748
PMID: 23987653
DOI: 10.1186/1471-2229-13-122

[…] traction of panicle traits. In recent years, plant phenotyping research has led to the development of software for plant screening facilities. Recent image processing solutions, such as TraitMill and HTPheno, offer general analysis for the measurement of plant height, volume and colorimetry [,].Other software provides 2-D image-based semi-automated processing for leaf phenotyping (Phenopsis or LAM […]


A novel mesh processing based technique for 3D plant analysis

BMC Plant Biol
PMCID: 3464618
PMID: 22553969
DOI: 10.1186/1471-2229-12-63

[…] nd growth rate). LAMINA [], another 2D-image based tool for leaf shape and size probing proposes a leaf analysis for various plant species. Recent image-processing solutions, such as TraitMill [] and HTPheno [], provide a more general plant analysis and measure information such as plant height, width, centre of gravity, projected area and bio-volume, and provide colorimetric analysis (e.g. greenne […]


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HTPheno institution(s)
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany; Martin Luther University Halle-Wittenberg, Institute of Computer Science, Halle, Germany

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