HTSCluster pipeline

HTSCluster specifications

Information


Unique identifier OMICS_07338
Name HTSCluster
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0.4
Stability Stable
Requirements capushe
Maintained Yes

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Documentation


Maintainer


  • person_outline Andrea Rau <>

Publication for HTSCluster

HTSCluster IN pipeline

2017
PMCID: 5359931
PMID: 28320315
DOI: 10.1186/s12864-017-3623-8

[…] 93.39%, 95.1%, and 92.07%, respectively. additionally, mapping reads from one species onto another species reference produced successful mapping rates of >85%., over 5 independent runs, we used htscluster [44] and the em algorithm [45] to fit a sequence of poisson mixture models with k = 1, 2, …, 60 clusters for the expression estimates of each reference transcriptome. using slope […]

HTSCluster institution(s)
INRA, UMR1313 Génétique animale et biologie intégrative, Jouy-en-Josas, France, AgroParisTech, UMR1313 Génétique animale et biologie intégrative, Paris 05, France; Institut de Mathématiques de Toulouse, INSA de Toulouse, Université de Toulouse, Toulouse, France; UMR AgroParisTech/INRA MIA 518, Paris, France; INRA, UMR 1165 URGV, Saclay Plant Sciences, Evry, France; UEVE, UMR URGV, Saclay Plant Sciences, Evry, France; CNRS, ERL 8196, URGV, Saclay Plant Sciences, Evry, France; Inria Saclay - Île-de-France, Orsay, France

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