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htSeqTools | High-throughput sequencing quality control, processing and visualization in R

A package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. htSeqTools includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists. htSeqTools can be a valuable complement for pipelines and advanced analysis strategies.

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htSeqTools forum

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htSeqTools classification

htSeqTools specifications

Unique identifier:
OMICS_01233
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

htSeqTools distribution

versioning

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No versioning.

htSeqTools support

Documentation

Credits

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Publications

Institution(s)

Biostatistics and Bioinformatics Unit, Institute for Research in Biomedicine of Barcelona, Barcelona, Spain

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.