HTSFilter specifications


Unique identifier OMICS_14779
Name HTSFilter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.14.1
Stability Stable
Maintained Yes



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  • person_outline Andrea Rau <>

HTSFilter article

HTSFilter citation

PMCID: 5682283

[…] trimmed using cutadapt 1.0. potential pcr duplicates were removed using samtools 1.3. reads were then aligned on the grch38 human genome using star 2.4.2a. differential expression on filtered genes (htsfilter 1.7.1), were performed using deseq2 in r 3.3.1. genes were declared differentially expressed with a false discovery rate < 5%. for heatmap, genes differentially expressed with fold […]

HTSFilter institution(s)
INRA, UMR, Génétique animale et biologie intégrative, Jouy-en-Josas, France; AgroParisTech, UMR1313 Génétique animale et biologie intégrative, Paris, France; Inria Saclay - Île-de-France, Orsay, France
HTSFilter funding source(s)
This work was supported by the French National Research Agency [ANR-09-GENM-006, Biocart project].

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