HTSmix specifications

Unique identifier:
OMICS_12185
Interface:
Command line interface
Input data:
HTSmix takes as input data in a tabular format (e.g. as read from a spreadsheet).
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
lme4, locfdr, fdrtool, cellHTS2
Software type:
Package/Module
Restrictions to use:
None
Output data:
It outputs the results in a same format as the open-source R-based package cellHTS2. Therefore, all the downstream analysis steps can be directly applied to the results from both packages.
Programming languages:
R
Stability:
Stable
Maintained:
Yes

versioning

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HTSmix distribution

download

HTSmix support

Documentation

Maintainer

  • Olga Vitek <>

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Publications

Institution(s)

Department of Statistics, Purdue University, West Lafayette, IN, USA; Department of Plant and Soil Science, School of Biological Sciences, University of Aberdeen, Aberdeen, UK; USDA-ARS Plant Genetics Research Unit, Donald Danforth Plant Science Center, St. Louis, MO, USA; Department of Crop and Soil Sciences, Cornell University, Ithaca, NY, USA; Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK; Department of Computer Science, Purdue University, West Lafayette, IN, USA

Funding source(s)

NSF BIO/DBI 1054826; NSF DBI-0606193; NSF MCB-0923731; NIH 4R33DK070290-02

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