HTSmix specifications

Information


Unique identifier OMICS_12185
Name HTSmix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data HTSmix takes as input data in a tabular format (e.g. as read from a spreadsheet).
Output data It outputs the results in a same format as the open-source R-based package cellHTS2. Therefore, all the downstream analysis steps can be directly applied to the results from both packages.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Requirements lme4, locfdr, fdrtool, cellHTS2
Maintained Yes

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Documentation


Maintainer


  • person_outline Olga Vitek <>

Publication for HTSmix

HTSmix institution(s)
Department of Statistics, Purdue University, West Lafayette, IN, USA; Department of Plant and Soil Science, School of Biological Sciences, University of Aberdeen, Aberdeen, UK; USDA-ARS Plant Genetics Research Unit, Donald Danforth Plant Science Center, St. Louis, MO, USA; Department of Crop and Soil Sciences, Cornell University, Ithaca, NY, USA; Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK; Department of Computer Science, Purdue University, West Lafayette, IN, USA
HTSmix funding source(s)
NSF BIO/DBI 1054826; NSF DBI-0606193; NSF MCB-0923731; NIH 4R33DK070290-02

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