HubAlign statistics

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Citations per year

Number of citations per year for the bioinformatics software tool HubAlign

Tool usage distribution map

This map represents all the scientific publications referring to HubAlign per scientific context
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Associated diseases


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HubAlign specifications


Unique identifier OMICS_06990
Name HubAlign
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Somaye Hashemifar

Publication for HubAlign

HubAlign citations


CUFID query: accurate network querying through random walk based network flow estimation

BMC Bioinformatics
PMCID: 5751815
PMID: 29297279
DOI: 10.1186/s12859-017-1899-y

[…] function for a network querying with the default parameters and set the query type as a general querying because we cannot get the results when we set the query type as a heuristic querying. Although HubAlign is a pairwise network alignment algorithm, we used HubAlign to compare the performance of network querying algorithm because network querying can be classified as a special case of a local ne […]


Unified Alignment of Protein Protein Interaction Networks

Sci Rep
PMCID: 5430463
PMID: 28424527
DOI: 10.1038/s41598-017-01085-9
call_split See protocol

[…] ved sub-structure, or symmetric sub-structures scores, by using dedicated cross-over and fitness functions. We use MAGNA++, which is an updated version of MAGNA that allows for parallel computations. HUBALIGN is based on the observation that proteins acting as hubs in the PPI networks are functionally and topologically more important, as their removal may disconnect functional parts of the intera […]

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HubAlign institution(s)
Toyota Technological Institute at Chicago, Chicago, IL, USA,Toyota Technological Institute at Chicago, Chicago, IL, USA

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