HugeSeq specifications

Information


Unique identifier OMICS_00288
Name HugeSeq
Alternative name High-throUghput GEnome SEQuencing
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some sequence reads, both single end and paired end.
Input format FASTA,FASTQ
Operating system Unix/Linux
Programming languages Perl, Python, R
Parallelization MapReduce
Computer skills Advanced
Stability No
Requirements STANOVAR, BEDtools, BreakDancer, BreakSeq Lite, BWA, CNVnator, GATK, JDK, Modules Release, Picard Tools, Pindel, Simple Job Manager, Tabix, vcftools, zlib, root
High performance computing Yes
Maintained No

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Publication for High-throUghput GEnome SEQuencing

HugeSeq institution(s)
Department of Genetics, Stanford University, Stanford, CA, USA; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Computer Science, Yale University, New Haven, CT, USA
HugeSeq funding source(s)
Supported by the US National Institutes of Health.

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