Hum-mPLoc statistics

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Hum-mPLoc specifications

Information


Unique identifier OMICS_05421
Name Hum-mPLoc
Alternative name Hum-PLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainers


  • person_outline Hong-Bin Shen <>
  • person_outline Kuo-Chen Chou <>

Information


Unique identifier OMICS_05421
Name Hum-mPLoc
Alternative name Hum-PLoc
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A protein sequence
Input format FASTA
Output data The prediction result and each subcellular localization's decision
Operating system Unix/Linux
Database management system MySQL
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Maintainers


  • person_outline Hong-Bin Shen <>
  • person_outline Kuo-Chen Chou <>

Publications for Hum-mPLoc

Hum-mPLoc in publications

 (11)
PMCID: 5588793
PMID: 28890846
DOI: 10.7717/peerj.3561

[…] which can specifically predict errps does not exist. moreover, predictors like proloc-go (), knowpredsite (), slocx (), iloc-animal (), iloc-euk (), cello v-2.5 (), hybridgo-loc (), mgoasvm (), hum-ploc (), euk-mploc (), pslt (), euk-mploc 2.0 (), the method developed by , and considered er as one among many subcellular locations. but these have some shortcomings like (i) among […]

PMCID: 5259966
PMID: 28155671
DOI: 10.1186/s12918-016-0352-6

[…] are run in non-homology mode where all the homologous structures identified with sequence identities greater than or equal to 30% are removed. the subcellular localization is predicted by using hum-mploc []., the protein sequences are composed of 20 native amino acids, while in natural language, the sentences are comprised by words. such similarity has draw researchers attention […]

PMCID: 4914962
PMID: 27323846
DOI: 10.1038/srep28087

[…] learning step. the training set reconstruction will be introduced from two aspects, namely, data sources and data processing. the new dataset contains mainly two sources, which are locate and hum-mploc 2.0., about 526 (480+43+3 = 526) protein sequences are recorded as multi-label sequences (no repeat), which have two or more types of subcellular sites (the number of sites p1 is greater […]

PMCID: 4752481
PMID: 26871581
DOI: 10.1371/journal.pone.0148530

[…] of c. pneumoniae in the host cell using bioinformatics predictors including expasy pi/mw tool, nuclear localization signal (nls) mapper, balanced sub cellular localization predictor (baceilo), and hum-mploc 2.0. we predicted 47/1112 nuclear-targeting proteins of c. pneumoniae connected with several possible alterations in host replication and transcription during intracellular infection. […]

PMCID: 4100115
PMID: 24886813
DOI: 10.3390/ijms15069670

[…] and testing algorithms., since the earliest subcellular predictors psort [], signalp [,] and targetp [], there has been substantial progress in the development of these predictors. one of these, hum-mploc 2.0 [,,], which is a human subcellular localization predictor, shows a substantial advancement over earlier versions, the hum-ploc and hum-mploc. briefly, the datasets included […]


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Hum-mPLoc institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China; Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China
Hum-mPLoc funding source(s)
This work was supported by the Natural Science Foundation of China (No. 61671288), the Science and Technology Commission of Shanghai Municipality (No. 16JC1404300), and the Shanghai Municipal Natural Science Foundation (No. 16ZR1448700).

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