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Human Protein Atlas specifications


Unique identifier OMICS_03913
Name Human Protein Atlas
Restrictions to use None
Maintained Yes


  • Primates
    • Homo sapiens

Publication for Human Protein Atlas

Human Protein Atlas citations


Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms

PMCID: 5907296
PMID: 29713252
DOI: 10.1186/s12014-018-9193-1

[…] ins were plasma proteins (Additional file : Fig. S2c, Additional file : Table S1). To determine whether the discovered proteins are expressed in the pancreas, the dataset was crossreferenced with The Human Protein Atlas (, May 31, 2017)—2613 genes had corresponding mRNA entries and 2021 genes had corresponding protein entries in the pancreas (Additional file : Fig. S2e, […]


HLA and proteasome expression body map

BMC Med Genomics
PMCID: 5872580
PMID: 29587858
DOI: 10.1186/s12920-018-0354-x

[…] Human tissue RNA-Seq data was retrieved from the Genotype Tissue Expression consortium [] (GTEx; 3926 samples from 30 tissues), the Human Protein Atlas [] (204 samples from 30 tissues), as well as 20 retina samples from the Sequence Read Archive (Table , Additional file : Table S1). These samples were processed using seq2HLA [] to […]


Rare variants in axonogenesis genes connect three families with sound–color synesthesia

Proc Natl Acad Sci U S A
PMCID: 5866556
PMID: 29507195
DOI: 10.1073/pnas.1715492115

[…] the highest and lowest expression, respectively (Table S1).As protein levels are not always well correlated with RNA expression (), we combined these findings with immunohistochemistry data from the Human Protein Atlas, which includes manually quantified protein expression from human cerebral cortical tissue of three adult donor brains (age range, 37–70 y) (). The Atlas included results for each […]


Carbonic Anhydrases: Role in pH Control and Cancer

PMCID: 5876008
PMID: 29495652
DOI: 10.3390/metabo8010019

[…] e potential of CA I as a tumor-associated isoform has not been extensively studied. However, according to multiple genomic databases including the cBioPortal of the cancer genome atlas (TCGA) and the human protein atlas, medium to high levels of CA1 mRNA was detected in acute myeloid leukemia, colorectal cancer, and renal carcinoma patients, based on RNA sequencing [,,,]. Immunohistochemical (IHC) […]


The Gene Centric Content Management System and Its Application for Cognitive Proteomics

PMCID: 5874771
PMID: 29473895
DOI: 10.3390/proteomes6010012

[…] inventory was split among different teams and countries [].At the beginning of the C-HPP there were established resources on proteomic MS-data (PRIDE [], GPMdb [] and PeptideAtlas []); affinity data (Human Protein Atlas []); human proteome data in neXtProt []; and flexible platforms to work with heterogeneous molecular data, such as TAVERNA []. Despite such a representative diversity of existing I […]


CDCA5 regulates proliferation in hepatocellular carcinoma and has potential as a negative prognostic marker

PMCID: 5824752
PMID: 29503564
DOI: 10.2147/OTT.S154754

[…] atter plots. Details of standardized normalization techniques and statistical calculations are provided on the Oncomine website.Immunohistochemistry images were downloaded from the publicly available Human Protein Atlas (HPA; version 8.0, which is a database of tissue microarray (TMA) images that were labeled with antibodies against 11,250 human proteins. These TMAs co […]


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