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Human Proteinpedia specifications


Unique identifier OMICS_02908
Name Human Proteinpedia
Restrictions to use None
Maintained Yes


  • Primates
    • Homo sapiens


  • person_outline Akhilesh Pandey

Publication for Human Proteinpedia

Human Proteinpedia citations


Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host Mimicking Short Linear Motifs

PLoS Comput Biol
PMCID: 5302801
PMID: 28129350
DOI: 10.1371/journal.pcbi.1005368

[…] ets, to derive a PPI network. The list of hepatocyte surface proteins used to develop our virus-host PPI network was collected from Human Protein Reference Database [] (HPRD; and Human Proteinpedia Database ( [] by using the keywords “Liver” or “Hepatocyte” for the tissue type and “Extracellular region,” “Plasma membrane,” “Cell surface,” or “C […]


Proteomics in India: the clinical aspect

PMCID: 5097398
PMID: 27822170
DOI: 10.1186/s12014-016-9122-0

[…] asets. Thus, bioinformatics is one of the pillars of proteomics. Researchers at IOB (, Bangalore have developed sophisticated bioinformatics tools like HPRD (, Human Proteinpedia ( and Human Proteome Map, a database on pancreatic cancers and several human signaling pathways [–]. It is through creation of the ‘Human Proteome Map’ th […]


Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

PMCID: 4409848
PMID: 25158685
DOI: 10.1002/pmic.201400302

[…] DB [], MassIVE (Mass Spectrometry Interactive Virtual Environment), Chorus, MaxQB [], PASSEL (PeptideAtlas SRM Experiment Library) [], MOPED (Model Organism Protein Expression Database) [], PaxDb [], Human Proteinpedia [], and the human proteome map (HPM) []. Furthermore, there are several more specialized resources that will only be cited briefly in this review. It is important to mention here th […]


Host response profile of human brain proteome in toxoplasma encephalitis co infected with HIV

PMCID: 4232683
PMID: 25404878
DOI: 10.1186/1559-0275-11-39

[…] ressed and downregulated proteins is provided in Tables  and , respectively. Representative MS/MS spectra of selected proteins are provided in Figure . We have deposited the mass spectrometry data to Human Proteinpedia and PRIDE repositories [, ].Figure 1 […]


Proteomic analysis of human vitreous humor

PMCID: 4106660
PMID: 25097467
DOI: 10.1186/1559-0275-11-29
call_split See protocol

[…] ization, molecular function and biological process of identified proteins were analyzed using gene ontology (GO) compliant databases - Human Protein Reference Database (HPRD: and Human Proteinpedia [,]. […]


Ser 634 and Ser 636 of Kaposi’s Sarcoma Associated Herpesvirus RTA are Involved in Transactivation and are Potential Cdk9 Phosphorylation Sites

Front Microbiol
PMCID: 3283893
PMID: 22371709
DOI: 10.3389/fmicb.2012.00060

[…] ds 500–550 (33%). (2) In addition to multiple PKC and casein kinase II consensus sites, K-RTA harbors seven potential CDK phosphorylation motifs (T449, T540, T628, S634, S636, S644, S650). (3) In the Human Proteinpedia database, the sequences between amino acids 633–652 share high homology with an in vivo phosphorylated tryptic peptide derived from negative elongation factor B (NELF-B; Beausoleil […]


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Human Proteinpedia institution(s)
Institute of Bioinformatics, Bangalore, India

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