HSF specifications

Information


Unique identifier OMICS_00176
Name HSF
Alternative name Human Splicing Finder
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A single sequence
Computer skills Basic
Version 3.1
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Homo sapiens

Maintainers


HSF article

HSF citations

 (2)
2017
PMCID: 5902391

[…] of the public databases (1,000 genomes, exac, nhlbi, dbsnp, 1,000 japanese, internal database). this variant was predicted to alter the splice site leading to aberrant splicing by in silico tools human splicing finder and mutationtaster2 (desmet et al., 2009; schwarz, cooper, schuelke, & seelow, 2014). additionally, a rare missense variant affecting codon 401 in exon 11 (chr1:19564522; […]

2015
PMCID: 4450850

[…] lt;10 bp from) a sequence region containing 2 hexamer non-coding elements (also named as intron identity elements or iie), which may act as splicing motifs, according to the algorithms implemented in human splicing finder [12]. these motifs contain the following sequences: atggtg and tggtgg [12, 13].table 3genevariantindividual id and phenotypegenotype macf1 1:39,854,1319 (ss)(ac) macf1/kiaa0754 1 […]

HSF institution(s)
INSERM, U827, Montpellier, France; CHU Montpellier, Hopital Arnaud de Villeneuve, Laboratoire de Genetique Moleculaire, Montpellier, France; Universite Montpellier 1, UFR Medecine, Montpellier, France
HSF funding source(s)
Supported by European Community Seventh Framework Program (FP7/2007-2013) under grant agreement number 200754—the GEN2PHEN project, the European Community Sixth Framework Program (FP6) under grant agreement number 036825 and TREAT-NMD Network of Excellence.

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