hyb specifications

Information


Unique identifier OMICS_25237
Name hyb
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Grzegorz Kudla

Publication for hyb

hyb citation

library_books

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E

2016
PMCID: 5286369
PMID: 27836995
DOI: 10.15252/embj.201694639

[…] s that are bound by RNase E can be ligated together and recovered as cDNA sequencing reads that map non‐contiguously to distinct sites in the transcriptome. These were identified and mapped using the Hyb software package (Travis et al, ). From 21.9 M mapped reads, we recovered 176,874 RNA–RNA interactions (0.8%, Tables and ) including 1,733 sRNA–mRNA interactions (). There was substantial overlap […]

hyb institution(s)
Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, UK; Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK
hyb funding source(s)
Supported by the BBSRC Grant BB/J001279/1; by the Wellcome Trust Grant 097383; by the Wellcome Trust Grant 077248 and by the MRC.

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