Hybrid-denovo statistics

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Hybrid-denovo specifications

Information


Unique identifier OMICS_26120
Name Hybrid-denovo
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some Illumina paired-end sequencing reads.
Output data Some OTU BIOM table.
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Jun Chen <>

Publication for Hybrid-denovo

Hybrid-denovo in publication

PMCID: 5853488
PMID: 29564398
DOI: 10.1128/mSphere.00560-17

[…] and index (5′-actyaaakgaattgacggggctgactgact-3′). r1s and r2s were first demultiplexed by the use of illumina bcl2fastq software. paired r1-r2 reads were analyzed using hybrid-denovo (), which was specifically developed for nonoverlapping paired-end reads, with default parameter settings. briefly, quality filtering was performed using trimmomatic (). surviving read […]


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Hybrid-denovo institution(s)
Department of Health Sciences Research and Center for Individualized Medicine, Mayo Clinic, Rochester, NY, USA; Department of Surgery, Mayo Clinic, Rochester, NY, USA
Hybrid-denovo funding source(s)
Supported by Mayo Clinic Center for Individualized Medicine.

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