HybridCheck specifications

Information


Unique identifier OMICS_10304
Name HybridCheck
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for HybridCheck

HybridCheck citations

 (2)
library_books

A history of hybrids? Genomic patterns of introgression in the True Geese

2017
BMC Evol Biol
PMCID: 5568201
PMID: 28830337
DOI: 10.1186/s12862-017-1048-2

[…] rrepresentation of ABBA) result in a D-statistic that is significantly different from zero. For both genera, D-statistics were calculated for all possible combinations of three species in the program HybridCheck version 1.0.1 []. We combined all species of the other genus as the outgroup. To test for significance, we performed jackknife resampling using blocks of 50,000 bp. We did not quantify asy […]

library_books

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

2017
Plant Biotechnol J
PMCID: 5425390
PMID: 27889940
DOI: 10.1111/pbi.12674

[…] To test for genetic introgression between Australian and other Oryza species, we used the software package HYBRIDCHECK (Ward and van Oosterhout, ). We performed two tests and in each run four aligned sequences were analysed. In the first one, we tested for introgression between Taxon A and either O. rufipo […]

HybridCheck institution(s)
School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK

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