Protocols

hybriddetective specifications

Information


Unique identifier OMICS_20125
Name hybriddetective
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.0.9000
Stability Stable
Requirements
dplyr, ggplot2, grid, parallel, plyr, stringr, scales, reshape2, tidyr
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Brendan Wringe

Additional information


Certain functions in hybriddetective rely on the programs PGDSpider and PLINK.

Publication for hybriddetective

hybriddetective citation

call_split

Cleaner fish escape salmon farms and hybridize with local wrasse populations

2018
R Soc Open Sci
PMCID: 5882703
PMID: 29657779
DOI: 10.1098/rsos.171752
call_split See protocol

[…] ed with new SNPs until no significant comparisons remained. To assess the accuracy, efficiency and power to correctly identify individuals belonging to different hybrid classes, we used the R package HYBRIDDETECTIVE []. We used the function freqbasedsim_AlleleSample to generate three replicates of three simulated data sets with pure parents (Pure_A and Pure_B), first- and second-generation hybrids […]

hybriddetective institution(s)
Science Branch, Department of Fisheries and Oceans Canada, St. John’s, NL, Canada; Fisheries Ecology Division, National Oceanic and Atmospheric Administration Southwest Fisheries Science Center, Santa Cruz, CA, USA
hybriddetective funding source(s)
This work was supported by a Natural Sciences and Engineering Research Council Strategic Project Grant, a Natural Sciences and Engineering Research Discovery Grant, and Canadian Healthy Oceans Network, and Fisheries and Oceans Canada funding (International Governance Strategy; Programme for Aquaculture Regulatory Research; Genomics Research and Development Initiative).

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