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Capture Hi-C target enrichment | Hi-C analysis

The extremely large number of possible pairwise interactions in Hi-C samples imposes limitations on the realistically achievable sequencing depth at individual interactions, leading to reduced sensitivity. The recently developed Capture Hi-C (CHi-C)…
G T A T C G C T A
Juicer
Desktop

Juicer

Analyzes terabase-scale Hi-C datasets. Juicer allows users without a…

Analyzes terabase-scale Hi-C datasets. Juicer allows users without a computational background to transform raw sequence data into normalized contact maps with one click. Juicer produces a hic file…

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CHiCP
Web

CHiCP Capture HiC Plotter

A web-based tool that allows interactive exploration of promoter capture Hi-C…

A web-based tool that allows interactive exploration of promoter capture Hi-C (PCHi-C) interaction maps and integration with both public and user-defined genomic datasets. CHiCP employs a hybrid…

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CHiCAGO
Desktop

CHiCAGO Capture HiC Analysis of Genomic Organisation

A set of tools for calling significant interactions in Capture Hi-C data, such…

A set of tools for calling significant interactions in Capture Hi-C data, such as Promoter Capture Hi-C. CHiCAGO uses a convolution noise model accounting for both ‘Brownian’ (distance-dependent)…

G T A T C G C T A
HiC-Pro
Desktop

HiC-Pro

Designs to process Hi-C data, from raw fastq files (paired-end Illumina data)…

Designs to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. The pipeline is flexible, scalable and optimized. It can operate either on a single…

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