hybridlab specifications

Information


Unique identifier OMICS_20128
Name hybridlab
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability No
Requirements
Java Runtime Environment
Maintained No

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Publication for hybridlab

hybridlab in publications

 (47)
PMCID: 5882953
PMID: 29615778
DOI: 10.1038/s41598-018-23707-6

[…] individuals obtained from previous structure included in the analysis., to define assignment thresholds to each hybrid category used for our results, we performed hybridization simulations in hybridlab. for this, we used the individuals classified as parental in the structure analysis as the starting populations and simulated 50 hybrids for several generations: first, second and third […]

PMCID: 5817136
PMID: 29468044
DOI: 10.1002/ece3.3650

[…] limit of four and treating gaps as a fifth character state., in order to investigate the power of our markers to detect wildcat and domestic cat hybrid classes, we generated hybrid genotypes using hybridlab (nielsen, bach, & kotlicki, ). for this purpose, we selected complete empirical microsatellite genotypes (no missing loci) from the roadkill dataset that assigned to either parental […]

PMCID: 5668256
PMID: 29097725
DOI: 10.1038/s41598-017-14619-y

[…] of slugs in each category is given., all microsatellite loci were highly polymorphic with an average of 15 alleles per locus (ranging from 9 to 26, table ). using the threshold values obtained in hybridlab, we detected the presence of both non-admixed and admixed individuals in each transect with large differences regarding the frequency and distribution of hybrids. out of the 183 individuals […]

PMCID: 5597637
PMID: 28904401
DOI: 10.1038/s41598-017-11516-2

[…] tests were undertaken using three additional methods. prior to implementing these methods, we expanded the reference database to include simulated genotypes. these genotypes were simulated using hybridlab version 1.0, and corresponded to individuals arising from crosses within and among the genetically distinct c. becki populations on volcano wolf (pbl and pbr), and the two saddle-backed […]

PMCID: 5547120
PMID: 28785033
DOI: 10.1038/s41598-017-07847-9

[…] in two clusters, one corresponding to helvetica (blue lineage) and the other to all other lineages., to explore which individuals represent helvetica hybrids, hybrid genotypes were modelled using hybridlab 1.0. for doing so, 20 non-admixed representatives of each lineage occurring in the rhine contact zone were selected (blue and yellow lineages) as pure parental genotypes. using these data, […]


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hybridlab institution(s)
Department of Inland Fisheries, Danish Institute for Fisheries Research, Silkeborg, Denmark; Department of Theoretical Ecology, Lund University, Lund, Sweden; Department of Computer Science, University of Aarhus, Aarhus, Denmark

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