HybridSim-VS specifications

Information


Unique identifier OMICS_19472
Name HybridSim-VS
Alternative name HybridSim
Interface Web user interface
Restrictions to use None
Input data A 2D or 3D chemical structure.
Input format PDB, MOL2, SDF
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Additional information


http://www.rcidm.org/HybridSim-VS/tutorial/

Publication for HybridSim-VS

HybridSim-VS in publications

 (2)
PMCID: 5887197
PMID: 29621975
DOI: 10.1186/s12862-018-1163-8

[…] protocols., our first simulation included two main steps. during the first step, we randomly generated a species phylogenetic tree (i.e. first consensus tree here) t1 with n leaves using the hybridsim [] program. then, using the same program, we generated k−1 other consensus trees, t2, …, tk with n leaves, each of which differed from t1 by a specified number of hybridization events (the […]

PMCID: 4898792
PMID: 27017528
DOI: 10.1093/gbe/evw065

[…] distinguish it from hybrid speciation. “introgression” is a one way gene flow between species mediated by hybridization. that is, hybrids form, then breed back into one of the parent populations., hybridsim is a forward-in-time event-based simulator. we use a forward-in-time approach so that we can make the probability of a hybrid establishing depend on genetic distance. this would […]


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HybridSim-VS institution(s)
School of Bioscience and Bioengineering, South China University of Technology, Higher Education Mega Center, Guangzhou, China
HybridSim-VS funding source(s)
Supported in part by the National Natural Science Foundation of China (No. 81502984), the Natural Science Foundation of Guangdong Province (No. 2016A030310421), and the Science and Technology Program of Guangzhou (No. 201707010063).

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