Hydra-sv protocols

Hydra-sv specifications


Unique identifier OMICS_00318
Name Hydra-sv
Alternative name HYDRA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some discordant paired-end mappings.
Output format BEDPE
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Aaron Quilan <>

Publication for Hydra-sv

Hydra-sv IN pipeline

PMCID: 3846541
PMID: 23957733
DOI: 10.1186/1471-2164-14-565

[…] in one lane of an illumina hiseq generating 7,339,278 100 bp paired-end reads of median insert size 254 and median coverage 173x across the 440 bait regions., we aligned reads to hg19, used hydra to identify candidate recombinations [24], and visualized sites using the integrative genomics viewer [25]. breakpoints were determined by splitting reads with at least one member of a pair […]

Hydra-sv institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge UK; Department of Zoology, University of British Columbia, Vancouver, BC, Canada; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA
Hydra-sv funding source(s)
Supported by an NRSA postdoctoral fellowship 1F32HG005197-01, a Burroughs Wellcome Fund Career Award, an NIH Director’s New Innovator Award DP2OD006493-01, and by the UVA School of Medicine.

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