bookmark MEMHDX / Mixed Effects Models for HDX-MS analysis A web application and an R-package to help users analyze, validate and visualize large HDX-MS datasets. MEMHDX is composed of two elements. A statistical tool aids in the validation of the results by applying a mixed-effects model for each peptide, in each experimental condition, and at each time point, taking into account the time dependency of the HDX reaction and number of independent replicates. Two adjusted p-values are generated per peptide, one for the “Change in dynamics” and one for the “Magnitude of ΔD”, and are used to classify the data by means of a “Logit” representation. A user-friendly interface developed with Shiny by RStudio facilitates the use of the package. This interactive tool allows the user to easily and rapidly validate, visualize and compare the relative deuterium incorporation on the amino acid sequence and 3D structure, providing both spatial and temporal information.