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Hydroxymethylation analysis software tools | DNA methylation microarray data analysis

5-Methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) are important epigenetic regulators of gene expression. 5mC and 5hmC levels can be computationally inferred at single base resolution using sequencing or array data from paired DNA samples…
oxBS-MLE
Desktop

oxBS-MLE oxidative bisulfite Maximum Likelihood Estimate

An efficient method based on binomial modeling of paired bisulfite and…

An efficient method based on binomial modeling of paired bisulfite and oxidative bisulfite data from sequencing or array analysis. Evaluation in several datasets showed that oxBS-MLE outperformed…

OxyBS
Desktop

OxyBS

A method using maximum likelihood estimation to accurately estimate the…

A method using maximum likelihood estimation to accurately estimate the parameters of unmethylated cytosine (5C), 5mC and 5hmC from Infinium microarray data given the signal intensities from the oxBS…

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