- Unique identifier:
- Software type:
- Restrictions to use:
- Computer skills:
- Hypergeometric Optimization of Motif EnRichment
- Command line interface
- Operating system:
- Christopher Glass <>
- Christopher Benner <>
No open topic.
(Heinz et al., 2010)
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
PMID: 20513432 DOI: 10.1016/j.molcel.2010.05.004
Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of California, San Diego, La Jolla, CA, USA; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA; Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA; Department of Discovery Immunology, Genentech, San Francisco, CA, USA; Section of Experimental Haematology, University of Leeds, Leeds, UK
Supported by an NIH postdoctoral training grant and by NURSA consortium grant No DK62434 and further supported by NIH grants (HC088093, DK063491, CA52599, P50 GM081892-01A1) and a Foundation Leducq Transatlantic Network Grant.
5 user reviews
5 user reviews
One of the best tool for ChIPseq analysis along with downstream analysis till Motif searching and many more.
This is by far best tool for ChIP seq. Thank you so much authors.
Homer is one of the best available motif discovery software suite on the internet, especially for next-generation sequencing. I highly recommend it.
An amazing tool suite !!! Indispensable !
Orginally created for motif discovery from .fasta file or peak file, you can also use it to compare peaks between different experiments. Better than bedtools because it gives you all details, ideal to create Venn diagrams. You can also use it to extract DNA sequences from regions. This is the swiss knife for genomics !!!!
A suite offering a lot of tool, especially for ChIP-sequencing (motif detection, peak overlap, QC...)