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HyperTree specifications


Unique identifier OMICS_04814
Name HyperTree
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


No version available


Publication for HyperTree

HyperTree citations


Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome Wide Annotation and Global Transcriptomic Analysis

Genome Biol Evol
PMCID: 5737478
PMID: 28922793
DOI: 10.1093/gbe/evx161

[…] ntpellier.fr/phyml-sms/; last accessed August 30, 2017) (). Branch support values were calculated using the SH-like approximate likelihood ratio test (aLRT). The resulting trees were visualized using HyperTree v1.2.2 (). […]


Self (in)compatibility in apricot germplasm is controlled by two major loci, S and M

BMC Plant Biol
PMCID: 5405505
PMID: 28441955
DOI: 10.1186/s12870-017-1027-1

[…] phyton script. Bootstrapped data matrices were obtained using the Phyltools 1.32 software [] and used to test the stability of the neighbor joining trees constructed with the Phylip 3.62 package []. HyperTree software [] was used to visualize the obtained trees. […]


Molecular evolutionary dynamics of cytochrome P450 monooxygenases across kingdoms: Special focus on mycobacterial P450s

Sci Rep
PMCID: 5018878
PMID: 27616185
DOI: 10.1038/srep33099
call_split See protocol

[…] ree/). In this study, the phylogenetic tree of 1 772 mycobacterial P450s was viewed by iTOL (http://itol.embl.de/upload.cgi), and the phylogenetic tree of 17 598 P450s from 113 families was viewed by Hypertree 1.2.2. […]


Chemoproteomic Profiling of Lysine Acetyltransferases Highlights an Expanded Landscape of Catalytic Acetylation

J Am Chem Soc
PMCID: 4227742
PMID: 24836640
DOI: 10.1021/ja502372j
call_split See protocol

[…] S3 (). A pairwise alignment was generated using Clustal Omega, and a phylogenic tree was constructed using the neighbor-joining method. All phylogenetic trees were displayed in hyperbolic space using Hypertree, with branches of the tree designated by different colors and labeled by name where appropriate. […]


Identification and Functional Characterisation of CRK12:CYC9, a Novel Cyclin Dependent Kinase (CDK) Cyclin Complex in Trypanosoma brucei

PLoS One
PMCID: 3689728
PMID: 23805309
DOI: 10.1371/journal.pone.0067327

[…] w.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi) or via the website www.kinase.com. Cyclin and kinase domains were then aligned and Bootstrap Neighbour Joining trees were generated using ClustalX (1.81) . HyperTree software was used to format the output of the phylogenetic trees . […]


Injury elicited stressors alter endogenous retrovirus expression in lymphocytes depending on cell type and source lymphoid organ

BMC Immunol
PMCID: 3562510
PMID: 23289855
DOI: 10.1186/1471-2172-14-2

[…] ro Version 8.1.2 (DNASTAR, Madison, WI). Multiple sequence alignment of the 100 unique U3s was performed using the Clustal W method in MegAlign (DNASTAR), and a phylogenetic tree was generated by the HYPERTREE program []. Seven U3 sequences, representing the seven phylogenetic branches, were subjected to a multiple alignment analysis to examine the U3 sequence features of direct repeats (1/1*, 4/4 […]


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HyperTree institution(s)
SUGEN, South San Francisco, CA, USA

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